Privacy-Preserving Medical Knowledge Retrieval with Self-Supervised Hash Learning and Adversarial Defense for Healthcare AI Agents
Keywords:
Privacy-preserving retrieval; self-supervised hashing; adversarial defense; healthcare AI agents; medical knowledge graphs; secure multi-party computationAbstract
The rapid integration of artificial intelligence agents into clinical decision support systems has intensified the demand for medical knowledge retrieval pipelines that simultaneously ensure high-fidelity semantic access, rigorous privacy protection, and resilience against adversarial manipulation. This paper presents a system-level architectural investigation into privacy-preserving medical knowledge retrieval that unifies self-supervised hash learning with layered adversarial defense mechanisms. By mapping medical knowledge fragments into compact binary codes through self-supervised contrastive objectives, the framework enables efficient approximate nearest-neighbor search over distributed repositories without exposing sensitive clinical content. The proposed architecture couples a differentially private hash encoder with secure index structures and an adversarial sanitization module that monitors query integrity and defends against both input-space perturbations and knowledge-poisoning attacks. We examine structural trade-offs between hash code length, retrieval precision, computational latency, and achievable privacy guarantees, drawing on cross-domain insights from cryptographically secure computation, federated learning, and adversarial robustness literature. Deployment considerations are analyzed within the context of hospital information ecosystems and cross-border regulatory regimes, addressing governance challenges such as algorithmic auditing, fairness across heterogeneous patient populations, and the sustainability of large-scale hash-based retrieval infrastructure. The study further explores forward-looking policy implications for certifying autonomous healthcare AI agents that rely on privacy-preserving retrieval as a core cognitive operation. The analysis demonstrates that self-supervised hashing constitutes a promising foundation for trust-enhancing knowledge access, yet requires careful co-design with adversarial defense, governance frameworks, and lifecycle management to withstand emerging threat surfaces in medical decision-making environments.
References
1. Rieke, N., Hancox, J., Li, W., Milletari, F., Roth, H. R., Albarqouni, S., ... & Cardoso, M. J. (2020). The future of digital health with federated learning. npj Digital Medicine, 3, 119.
2. Abadi, M., Chu, A., Goodfellow, I., McMahan, H. B., Mironov, I., Talwar, K., & Zhang, L. (2016). Deep learning with differential privacy. Proceedings of the 2016 ACM SIGSAC Conference on Computer and Communications Security, 308–318.
3. Yu, Z., Wu, S., Dou, Z., & Bakker, E. M. (2022). Deep hashing with self-supervised asymmetric semantic excavation and margin-scalable constraint. Neurocomputing, 483, 87-104.
4. Ebrahimi, J., Rao, A., Lowd, D., & Dou, D. (2018). HotFlip: White-box adversarial examples for text classification. Proceedings of the 56th Annual Meeting of the Association for Computational Linguistics (Short Papers), 31–36.
5. Jin, D., Jin, Z., Zhou, J. T., & Szolovits, P. (2020). Is BERT really robust? A strong baseline for natural language attack on text classification and entailment. Proceedings of the AAAI Conference on Artificial Intelligence, 34(05), 8018-8025.
6. Lewis, P., Perez, E., Piktus, A., Petroni, F., Karpukhin, V., Goyal, N., ... & Kiela, D. (2020). Retrieval-augmented generation for knowledge-intensive NLP tasks. Advances in Neural Information Processing Systems, 33, 9459-9474.
7. Wong, W. K., Cheung, D. W., Kao, B., & Mamoulis, N. (2009). Secure kNN computation on encrypted databases. Proceedings of the 2009 ACM SIGMOD International Conference on Management of Data, 139-152.
8. Finlayson, S. G., Bowers, J. D., Kohane, I. S., & Beam, A. L. (2019). Adversarial attacks on medical machine learning. Science, 363(6433), 1287-1289.
9. Chen, T., Kornblith, S., Norouzi, M., & Hinton, G. (2020). A simple framework for contrastive learning of visual representations. Proceedings of the 37th International Conference on Machine Learning, 1597-1607.
10. Zhang, H., Zhang, J., Lu, G., & Zhang, D. (2021). Asymmetric deep hashing for large-scale histopathological image retrieval. Computers in Biology and Medicine, 137, 104809.
11. Dwork, C., McSherry, F., Nissim, K., & Smith, A. (2006). Calibrating noise to sensitivity in private data analysis. In Theory of Cryptography Conference, 265-284.
12. He, J., Baxter, S. L., Xu, J., Xu, J., Zhou, X., & Zhang, K. (2019). The practical implementation of artificial intelligence technologies in medicine. Nature Medicine, 25(1), 30-36.
13. Mohassel, P., & Zhang, Y. (2017). SecureML: A system for scalable privacy-preserving machine learning. Proceedings of the 38th IEEE Symposium on Security and Privacy, 19-38.
14. Li, T., Sahu, A. K., Talwalkar, A., & Smith, V. (2020). Federated learning: Challenges, methods, and future directions. IEEE Signal Processing Magazine, 37(3), 50-60.
15. Shen, D., Su, Q., Chapfuwa, P., Wang, W., Wang, G., Henao, R., & Carin, L. (2018). NASH: Toward end-to-end neural architecture for generative semantic hashing. Proceedings of the 56th Annual Meeting of the Association for Computational Linguistics, 795-805.
16. Yang, E., Liu, T., Deng, C., & Tao, D. (2020). Adversarial examples for image retrieval. IEEE Transactions on Image Processing, 29, 7565-7577.
17. Hu, S. (2026). Research on Security Enhancement Methods for Adversarial Robust Large Language Model Intelligent Agents for Medical Decision-Making Tasks. arXiv preprint arXiv:2605.08257.
18. Obermeyer, Z., Powers, B., Vogeli, C., & Mullainathan, S. (2019). Dissecting racial bias in an algorithm used to manage the health of populations. Science, 366(6464), 447-453.
19. Morley, J., Machado, C. C. V., Burr, C., Cowls, J., Joshi, I., Taddeo, M., & Floridi, L. (2020). The ethics of AI in health care: A mapping review. Social Science & Medicine, 260, 113172.
20. Cao, N., Wang, C., Li, M., Ren, K., & Lou, W. (2014). Privacy-preserving multi-keyword ranked search over encrypted cloud data. IEEE Transactions on Parallel and Distributed Systems, 25(1), 222-233.
21. Alsentzer, E., Murphy, J. R., Boag, W., Weng, W. H., Jindi, D., Naumann, T., & McDermott, M. B. A. (2019). Publicly available clinical BERT embeddings. Proceedings of the 2nd Clinical Natural Language Processing Workshop, 72-78.
22. Strubell, E., Ganesh, A., & McCallum, A. (2019). Energy and policy considerations for deep learning in NLP. Proceedings of the 57th Annual Meeting of the Association for Computational Linguistics, 3645-3650.
23. Papernot, N., McDaniel, P., Jha, S., Fredrikson, M., Celik, Z. B., & Swami, A. (2016). The limitations of deep learning in adversarial settings. Proceedings of the 1st IEEE European Symposium on Security and Privacy, 372-387.
24. Bonawitz, K., Ivanov, V., Kreuter, B., Marcedone, A., McMahan, H. B., Patel, S., Ramage, D., Segal, A., & Seth, K. (2017). Practical secure aggregation for privacy-preserving machine learning. Proceedings of the 2017 ACM SIGSAC Conference on Computer and Communications Security, 1175-1191.
25. Rotmensch, M., Halpern, Y., Tlimat, A., Horng, S., & Sontag, D. (2017). Learning a health knowledge graph from electronic medical records. Scientific Reports, 7, 5994.
Downloads
Published
How to Cite
Issue
Section
License
Copyright (c) 2026 Bioinformatics Insights and Analytics

This work is licensed under a Creative Commons Attribution 4.0 International License.



